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Bispecific Aptamer Development Service
TEK Biotech has a professional team dedicated to exploring the fields of antibody drug development and aptamer development, particularly in the areas of in vitro screening of aptamers and affinity assessment, accumulating profound experience to assist clients in achieving effective cost control in antibody drug development experimental projects. TEK Biotech can provide customers with comprehensive aptamer development services covering gene analysis and synthesis, in vitro screening of aptamers, synthesis, and affinity determination. Based on the sample information provided by the customer, TEK Biotech uses the SELEX aptamer screening method to conduct in vitro aptamer screening for the target substance, obtaining aptamer sequences for the target. These sequences cover various forms such as RNA, DNA, and oligonucleotides. Using the obtained sequence to synthesize aptamers, fusing a single target aptamer with an RNA adapter can simultaneously block two targets, obtaining a bispecific nucleic acid aptamer that can recognize two or more different cell surface receptors and target two different molecules. The services provided by TEK Biotech provide solid support for the subsequent validation of adapter functions and the development of antibody drugs targeting specific molecules.
TEK Biotech provides customers with a diverse range of SELEX adapter screening services, suitable for aptamer development of various samples such as proteins, peptides, amino acids, and small molecule substances. By using various screening strategies such as magnetic bead SELEX, cell SELEX, and capture SELEX, after 6 to 10 rounds of rigorous screening, highly specific nucleic acid aptamers can be identified. The Aptamer library has a capacity of up to 10 ^ 14, which is sufficient to ensure the screening of high affinity nucleic acid aptamers for customer specific targets. By using NGS sequencing technology, 5 to 15 adapter sequences targeting the target molecule can be obtained. And the binding affinity of the screened nucleic acid aptamers can reach the nM to pM level. TEK Biotech fuses a single adapter with a double stranded RNA adaptor protein for the development of a bispecific aptamer, leaving 2-3 unpaired bases between the adaptor and the adapter to create space for the single adapter. The adaptor includes nucleotides, peptides, organic chains, and inorganic materials.
At the same time, TEK Biotech is also committed to providing customers with a complete downstream service system, including the synthesis and affinity evaluation of aptamers after ligand screening is completed, in order to comprehensively assist in promoting customers' experimental projects. TEK Biotech's research team is able to carefully analyze and develop practical solutions based on customers' specific experimental requirements, and provide personalized customized services to ensure that each customer's special needs are properly met.
█ Bispecific Aptamer Development Service:
The structure and function of nucleic acid aptamers are similar to antibodies, and they can specifically bind to target molecules, but have the advantages of smaller volume and easier modification. The aptamer library constructs a library containing a large number of different nucleic acid sequences, and then uses high-throughput technology to screen these sequences, selecting aptamers that are highly compatible with the target molecule. An aptamer library containing a large number of random or mutated nucleic acid sequences can ensure the diversity and coverage of the aptamer library. These sequences are usually composed of a middle random sequence and a fixed primer binding sequence at both ends. Nucleic acid aptamers can be used to design drugs targeting specific molecules, providing new drug design ideas for precision medicine and personalized therapy. Nucleic acid aptamers can serve as carriers for delivering genes to specific cells or tissues, with potential applications in gene therapy. Nucleic acid aptamers can be used to design precise targeted drugs, providing new ideas for the treatment of diseases such as cancer. By combining nucleic acid aptamers with sensors, high-sensitivity biosensors can be constructed for detecting disease markers or environmental pollutants.By continuously optimizing the screening process and technical means, the screening efficiency and accuracy can be improved, thereby continuously expanding the target range of nucleic acid aptamers, including more types of proteins, cells, and other biomolecules. In fields such as drug development, diagnostic technology, and gene therapy, more in-depth applied research has been carried out, thereby promoting the progress and development of biomedical research.
By using SELEX adapter screening technology, adapter sequences that bind to the target substance can be obtained. Bispecific nucleic acid aptamers can simultaneously bind to two different targets, and have broad prospects in treatment, diagnosis, and biological research. Using a linker to connect two different target aptamers, the development of bispecific aptamers is achieved by fusing a single target aptamer with a double stranded RNA linker. And it has been verified that bispecific aptamers can exert a stronger effect than a single adapter, which may be due to the increased circulation time of bispecific aptamers compared to a single adapter. When used for immunity, aptamers are usually connected through oligonucleotide adapters, and DNA aptamers on T cells can be coupled with other aptamers. In addition, liposomes co modified with nanobodies and aptamers can also be used for connection. TEK Biotech uses RNA based bispecific aptamers to fuse a single target aptamer with a double stranded RNA adapter. The specific process is shown in Figure 1.
Figure 1 Development service process of bispecific aptamers
█ Service Content and Cycle:
Step | Service Content | Cycle |
Step 1: Construction and screening of nucleic acid aptamer library | (1) Synthesis of fixed and random sequences, in vitro construction of adapter library. (2) Using biotin labeled target proteins as screening targets. (3) Adaptation library screening and enrichment: PCR amplification enrichment+transcription+ gel running recovery, usually 6-10 rounds. (4) Screening products for NGS sequencing. (5) Delivery: 5-15 adapter sequences, experimental report, raw data (including NGS sequencing raw data and gel electrophoresis). | 10-15 Weeks |
Step2:Synthesis and affinity determination of bispecific aptamers (optional) | (1) Synthesis of aptamers based on sequences, fusion with double stranded RNA adapters to obtain bispecific aptamers. (2) Determination of affinity between bispecific aptamers and target targets, KD determination by BLI or SPR. (3) Delivery: Experimental report, raw data. | 6-8 Weeks |
█ Service Advantages:
According to the specific experimental needs of customers, there are multiple screening targets to choose from: metal ion, proteins, peptides, amino acids, small molecules, and cells and bacteria, etc | The library has a capacity of 10 ^ 13-10 ^ 14, sufficient to screen for nucleic acid aptamers targeting customer targets | RNA based bispecific aptamers fuse a single target aptamer with a double stranded RNA linker, resulting in high ligation efficiency | Multiple modification methods are available: DNA nucleic acid aptamer modification, nucleic acid aptamer PEG modification, fluorescent group modification, quenching group modification, etc |
SELEX technology platform mature: the affinity of nucleic acid aptamers obtained through screening can reach the nM-pM level | Multiple screening methods: magnetic bead SELEX, cell SELEX, capture SELEX, affinity chromatography SELEX, graphene oxide SELEX, etc. Scientists from Tek Biotech design them reasonably according to specific projects | 6-10 rounds of pressure screening can obtain high affinity and high specificity nucleic acid aptamers | Widely applicable: The delivered content can be used for molecular interaction analysis of proteins, nucleic acids, peptides, nanomaterials, and other molecules |
Common coupling methods include joints, oligo nucleic acid coupling, and liposome coupling. We fused a single aptamer with a 23bp double-stranded RNA adaptor protein and deliberately left 2-3 unpaired bases between the adaptor and the aptamer to provide space for each individual aptamer. Adaptors can be composed of various biosynthetic structural units, such as nucleotides, peptides, organic chains, and inorganic materials. For studies involving immunomodulatory bsApt, aptamer modules are often linked by oligonucleotide adaptors. Almost every bsApt construct has used a different sequence. The DNA aptamer with affinity for CD62L (aptamer LD201t1) present on naive T cells was coupled to other aptamers that recognize PTK 7 (aptamer sgc 8), PD-L1 (aptamer PD-L1) or whole Ramos cell (B cell lymphoma; aptamer TE02). These aptamer conjugates were joined together by the 5′and 3′ends of the called circular bsApts because the 5′and 3′ends were joined together using T4 DNA ligase after crossing the 13-nt flanking complementary sequence. But this coupling is because, without free ends, c-bsApts would be more resistant to degradation by serum exonuclease. In addition to the above nucleic acid-based ligation mode, a strategy using liposomes co-modified with aptamers exists as a ligation mode.
The bispecific aptamer can recognize two or more different cell surface receptors simultaneously and target two molecules simultaneously, showing better therapeutic effects and less drug resistance than traditional monoclonal antibodies. The dual-specificity molecule adopts a two-in-one form, has low administration complexity, and has a more favorable regulatory approval than the proposed combination of two single molecules. However, complex techniques such as high immunogenicity and production difficulties also affect antibody-based bispecific molecules. We developed an RNA-based dual-specificity aptamer capable of blocking both targets simultaneously using a single target aptamer to a double-stranded RNA adaptor. Bispecific aptamers were found to be more effective than individual aptamers in their ability to inhibit cell growth and induce apoptosis. When these aptamers were tested, the bispecific aptamer significantly inhibited intraperitoneal tumor growth more than a single aptamer alone or in combination. The enhanced efficacy of the bispecific aptamer is most likely attributed to its increased cycling time over the individual aptamers. Furthermore, we show that the bispecific aptamer is not toxic to the host and is unable to trigger innate immunogenicity.TEK Biotech has rich experience in screening aptamers, which can help customers better complete the screening and connection of dual-specific aptamers.In addition, a variety of small molecules, protein nucleic acid aptamer screening services.
Most immunomodulatory bsApt use ssDNA or double-stranded oligonucleotide adaptors of 15-25 nt (105-175 A). The researchers found that the joint length of 7-22 nt (49-152 A) mediated a significant cytotoxic effect, but not over 29 nt (200 A). The joint composition also plays a role in determining its rigidity, which affects the conformational entropy and 3D presentation of the binding domain. Most studies have used double-stranded adaptors and thus constitute a more rigorous design. Only two groups used single-stranded joints with lower stiffness. It was also shown that flexible joints containing both ssDNA and double-stranded DNA (dsDNA) parts (versus dsDNA alone) were less effective in forming intercellular junctions, which they attributed to poor thermal stability. Other studies suggest that two or three unpaired nucleotides flanking its 23-nt adaptor sequence are essential for function. When bsApt lost their specific and cytotoxic effects, using fully paired adaptors or those with only one unpaired nucleotide. These unpaired nucleotides provide each aptamer with the spatial degree of freedom to form its 3D structure. The adaptors used in each study show that various features are acceptable for a proof-of-concept design as long as the adaptors do not affect the folding and stability of the appropriate gamete.
Immunomodulatory bsApts can be classified according to the valence and the specificity of the two aptamer modules, where [m] corresponds to the valence of the tumor-targeting aptamer module and [n] corresponds to the valence of the immune cell-targeting gamete module. For example, the [1 + 2] name describes a construct consisting of an aptamer that binds the target tumor cell and two aptamers that bind the immune cells. Immune cell-targeting aptamers for most agonistic co-stimulatory receptors do require a bivalent design ([n] = 2) because crosslinking of the receptor through its dimeric form is required to induce signaling and T cell activation. Other aptamers that function as monomers (e.g., localization to TAA, natural killer [NK] cell activation, antagonism) can be designed using [1 + 1]. The primary goal of some bsApt with increased transparency is to increase the affinity of their targets, both on tumors and immune cells. Although no triple-specific immunomodulatory aptamers are currently available in the literature, their design can still be classified using this nomenclature.[1 + 1] Design can effectively bring immune cells in close proximity to tumor cells to generate silent intercellular junctions or cytotoxic immune synapses, as illustrated by multiple measures.[1 + 2] design increases the valence of aptamers targeting immune cells. To date, all immunomodulatory bsApts described using this design contain the dimer aptamer, a costimulatory receptor on agonistic immune cells.
The researchers found that the dual-specific ring aptamer of CIL-6A6-1, which binds IL-6 and sIL-6R with high affinity, is stable in serum for more than 48 hours. It can effectively block the IL-6 / s IL-6R interaction and significantly inhibit cellular inflammation. Most importantly, this bispecific aptamer is far more effective than combining the aptamer alone as well as the commercially available tocilizumab, highlighting the advantage of choosing the bi-specific ring aptamer as a molecular tool for anti-inflammatory therapy. Researchers have developed a unique chemical signature of the TME as a pathway for the de-specific detection of tumor cells and their elevated protein expression. This was achieved by designing a bispecific aptamer with one arm to detect the highly expressed tumor-associated metabolites ATP and to detect cell surface markers expressed on other T cell lymphomas. Bispecific aptamers (bsApts) have been shown to induce artificial immune synapses that promote T cell activation and subsequent tumor cell lysis in various in vitro and in vivo preclinical models. Bispecific aptamers may also serve as a novel strategy for targeting the enhanced antitumor immune response against malignancies expressing MUC 1. TEK Biotech can prepare bispecific aptamers to support researchers in overcoming problems in cancer and immune diseases.
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