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Nucleic Acid Aptamer Library Construction Service

TEK Biotech has been deeply involved in the field of antibody discovery for many years, establishing a mature aptamer library design system and accumulating rich project experience. TEK Biotech is committed to providing customers with high-quality nucleic acid aptamer library construction services, and providing strong support for downstream aptamer development research work such as nucleic acid aptamer screening, aptamer synthesis, functional verification, and development of targeted specific molecular drugs. At the same time, TEK Biotech can also provide customers with one-stop aptamer library design services, from gene analysis synthesis, aptamer selex screening, aptamer synthesis, to affinity determination, committed to meeting the project needs of various customers. Through TEK Biotech's nucleic acid aptamer sequence design services, sequence optimization and significant functional improvement have been achieved. By utilizing advanced adapter library design platforms, TEK Biotech ensures that customers can obtain efficient and accurate nucleic acid adapter results, contributing to their research journey.

The nucleic acid aptamer library constructed by TEK Biotech contains a large number of different sequences, ensuring a wide range of binding possibilities are covered. TEK Biotech finely adjusts key parameters such as sequence length, GC content, and secondary structure to enhance the diversity of aptamers in the library and strictly control their quality. With years of project accumulation, TEK Biotech has conducted in-depth analysis on the selected nucleic acid aptamer sequences, summarized the common structural characteristics of these sequences, and continuously improved sequence design by introducing mutation, extension, or shortening methods to optimize the sequences, improve the binding performance of aptamers, enhance their stability and biological activity. The adapter library constructed by TEK Biotech has a storage capacity of approximately 10 ^ 13-10 ^ 14 and can reach up to 10 ^ 14. With the high storage capacity of the adapter library and diverse aptamer selex screening technologies such as magnetic bead SELEX, cell SELEX, capture SELEX, etc., TEK Biotech can efficiently screen for highly specific adapter sequences targeting various sample types such as proteins, small molecule substances, cells, and bacteria, including RNA, DNA, and oligonucleotide sequences. And the binding affinity of nucleic acid aptamers obtained through aptamer selex screening can reach the nM pM level, and the affinity of aptamers for protein targets can reach the pM level. Customers only need to clarify their experimental requirements, and TEK Biotech's research team will customize an adapter library construction plan based on this, fully supporting their research work.

 

 Nucleic Acid Aptamer Library Construction Service:

 

Aptamer is an oligonucleotide sequence (DNA or RNA), also known as a "chemical antibody", that can bind to multiple target substances with high specificity and selectivity. The aptamer development can be traced back to virus research, particularly molecular biology studies on human immunodeficiency virus (HIV) and adenovirus, which have shown that these viruses encode small structured RNAs that bind to endogenous proteins. These RNA ligands can promote virus replication or alleviate host antiviral ability. With the development of SELEX, researchers are able to more effectively screen nucleic acid aptamers with high affinity for target substances from random single stranded nucleic acid sequence libraries for aptamer development.

SELEX technology continuously screens and amplifies nucleic acid aptamers with high affinity for target substances from the initial library. The steps include initial library design, target preparation, incubation of library and target, separation of binding sequences, PCR amplification, and enrichment pool for the next round of screening. Nucleic acid aptamers have a wide range of applications in the field of biosensors, especially electrochemical sensors based on conformational changes of nucleic acid aptamers (E-AB sensors), which have the characteristics of portability, simple operation, and low cost. Nucleic acid aptamers can serve as carriers for drug delivery, achieving precise drug delivery by specifically binding to target cells or tissues. In addition, some nucleic acid aptamers themselves also have therapeutic effects, such as the approved nucleic acid aptamer drugs Pegaptanib and Zimura. Nucleic acid aptamers also have potential applications in regenerative medicine and cell engineering, such as regulating cell differentiation, proliferation, and apoptosis.

The design of oligonucleotide libraries is quite unique, with fixed sequences at both ends and a random sequence embedded in the middle. The fixed sequence incorporates primer binding sites that facilitate PCR amplification. Random sequences typically contain 30-60 nucleotides, ensuring the diversity of the library, and these sequences will interact with the target substance. The design of the initial library is crucial for screening effectiveness. The design of the fixed region should ensure that self dimerization is avoided during amplification, and the length of the primer region is usually controlled between 18-21 nucleotides. The length range of random regions is generally between 30 and 60 nt, with a commonly used range of 40 nt. The design of short random regions is beneficial for subsequent truncation and application, while longer random regions are more likely to screen for structurally complex and highly specific adapter sequences in subsequent adapter screening techniques. TEK Biotech utilizes mature aptamer selex screening technology to accurately isolate oligonucleotides with high affinity for targets from a large random library. After multiple rounds of cyclic screening, SELEX fragments were further sequenced based on their enrichment status to obtain the corresponding adapter sequences. The design of the adapter library has a significant impact on the results of adapter screening techniques. The process of constructing the library and screening adapters by TEK Biotech is shown in Figure 1.

Construction and screening flowchart of nucleic acid aptamer library-tekbiotech.jpg

Figure 1 Construction and screening flowchart of nucleic acid aptamer library

 

 Service Content and Cycle:

 

Step

Service Content

Cycle

Step 1: Construction and screening of nucleic

acid aptamer library

(1) Synthesis of fixed and random sequences, in vitro construction of adapter library.

(2) Using biotin labeled target proteins as screening targets.

(3) Adaptation library screening and enrichment: PCR amplification enrichment+transcription+gel running

recovery, usually 6-10 rounds.

(4) Screening products for NGS sequencing.

(5) Delivery: 5-15 adapter sequences, experimental report, raw data (including NGS sequencing raw data 

and gel electrophoresis).

10-15 Weeks

Step2:Synthesis of aptamers and determination

of affinity (optional)

(1) Synthesize aptamers based on sequences.

(2) Affinity determination of adapter and target protein, KD determination by BLI or SPR.

(3) Delivery: Experimental report, raw data.

4-5 Weeks

 

 Service Advantages:

 

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According to the specific

experimental needs of 

customers, there are 

multiple screening 

targets to choose from:

metal ionproteins, 

peptides, amino acids, 

small molecules, and 

cells and bacteria, etc

The library has a 

capacity of 10 ^ 13-

10 ^ 14, sufficient to 

screen for nucleic acid 

aptamers targeting 

customer targets

SELEX technology 

platform mature: the 

affinity of nucleic acid 

aptamers obtained 

through screening can 

reach the nM-pM level

Multiple screening methods:

magnetic bead SELEX, cell

SELEX, capture SELEX, 

affinity chromatography 

SELEX, graphene oxide 

SELEX, etc. Scientists from

Tek Biotech design them 

reasonably according to 

specific projects

6-10 rounds of pressure

screening can obtain 

high affinity and high 

specificity nucleic acid 

aptamers

Widely applicable: The 

delivered content can be

used for molecular 

interaction analysis of 

proteins, nucleic acids, 

peptides, nanomaterials,

and other molecules

Supporting downstream

validation experiments: 

affinity validation 

(including bli and SPR 

affinity validation), 

competitive ELISA 

validation, flow blocking

validation, etc


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Nucleic Acid Aptamer Library Construction Service Frequently Asked Questions

  • What is an aptamer?

    Due to the low affinity of MAb therapy for biological macromolecules lipids and carbohydrates, the application of MAb has certain clinical limitations. To improve the affinity with the above biomacromolecules and lipids, carbohydrates, and other substances, the artificial ligand-aptamers are gradually produced and expanded. The aptamer is a kind of single-chain nucleic acid chain, that can be combined with a variety of different targets, with small size, low cost, uniform synthesis, custom modification, nucleic acid template properties, and other unique advantages, can expand the scope of the potential target, such as small molecule nucleic acid aptamer and ion aptamer can be used as a supplementary antibody, nucleic acid aptamer technology is now is developing rapidly. The nucleic acid aptamer is a kind of specific molecular recognition ability of single-stranded DNA or RNA molecules, by SELEX through in vitro screening, consists of 20~110 nucleotides, sequence contains random sequence and fixed sequence, by folding can form a tertiary structure, high affinity, can specifically binding target molecules of small molecule group.TEK Biotech has completed several aptamer projects, with rich experience and mature technology. In addition, TEK Biotech also provides customized ligand library design, antibody expression and purification, affinity determination, antibody sequencing, etc., to meet the needs of customers.

  • Steps for the aptamer library construction?

    The basis for screening services for aptamers is the SELEX technology, The SELEX technology follows from researchers using the technology to synthesize a single-stranded oligonucleotide library in vitro, Our target molecules or target sites were then incubated in a library containing different nucleic acid sequences, Finally, the oligonucleotide without binding was washed out by the washing solution, Enabling unbound nucleotides and library separation, We then eluted the bound library before using a high concentration of the salt solution, The eluted oligonucleotides are the oligonucleotides we need that can bind to the target molecule, We then used PCR to deamplify oligonucleotides that can bind to the target molecule, Start with the next round of screening. Repeat the above steps for repeated rounds of screening, and each round involves the binding of the target molecule, isolation of the unbound sequence, and amplification of the bound sequence. As we repeated multiple screens, the higher the round of screening, the higher the specificity and affinity of our library, and eventually we can screen oligonucleotide sequences that are highly bound and highly affinity to our target molecules. However, we need to note that when screening RNA aptamers by RNA aptamer library synthesis service, we need to reverse transcription of RNA into DNA, and then conduct subsequent SELEX aptamer library screening.

  • How to solve the problem of insufficient diversity and unstable quality in the nucleic acid aptamer library service?

    In the nucleic acid aptamer library service, we may find that the nucleic acid aptamer library sequence is not enough, and diversity cannot meet our requirements, this situation may cause our build library no way to be all possible and molecular binding sites to be identified, may appear missing phenomenon, lead to our screening to high-affinity nucleic acid aptamer probability also reduced together. At the same time, sequence errors, deletions, or contamination may occur during the construction of the aptamer library, which will also reduce the quality of our library and reduce the possibility of getting high-affinity nucleic acid aptamers. Given the above series of problems, in the library design, the library design parameters are optimized, such as the sequence length of nucleic acid, nucleic acid GC content, secondary structure, and other factors, to improve the diversity of our library construction. TEK Biotech also uses advanced aptamer synthesis technology to ensure the randomness and diversity of our synthetic sequences and improve the efficiency of our synthetic sequences. At the same time, TEK Biotech also strengthened the quality control in each step of building the library and improved the quality of primers, templates, and enzymes by using high-quality reagents and strictly following the standard steps. At the same time, our company also tests the sequencing quality of the aptamer libraries to ensure that the libraries delivered to customers are of high quality and stable.

  • How to solve the nucleic acid aptamer library service if faced with low library construction efficiency and poor library and target binding ability?

    In the aptamer library service, we found that the process of building the aptamer library takes a long time, the instruments and materials are expensive, and the whole process is not efficient. At the same time, we may find that the constructed aptamer library does not bind well to the target molecule, and then the experimental screening effect is not good. The above situation may be our stumbling block in the process of building nucleic acid aptamer library, TEK Biotech can through the process of library construction optimization and the reasonable arrangement of experimental time, then use advanced efficient aptamer synthesis technology and amplification technology, improve the efficiency of our library construction, save our experimental time and cost. At the same time, at the beginning of the aptamer library design, TEK Biotech fully considered the characteristics of the target molecule and the need to combine with the aptamer, and the researchers designed the nucleic acid sequences with high affinity and specificity according to the above requirements. At the same time, in the process of library screening, TEK Biotech uses various screening strategies and optimization of various screening conditions to help us improve the binding ability of the library and target.

  • How to solve the problem of low aptamer affinity encountered in the nucleic acid aptamer library service?

    When screening nucleic acid aptamers, if the number of repeats is not enough, the specificity and affinity of our selected aptamers may be low. Therefore, with the continuous development of modern technology, the traditional SELEX aptamer library screening technology has been continuously improved and a series of related technologies have been derived. IP-SELEX is SELEX, which can be combined with immunoprecipitation; Cell-SELEX is operated at the cellular level and is generally used to screen aptamers that can identify cell surface molecules; Apta-Seq and high-throughput sequencing technology are combined to screen large-scale libraries, which greatly improves the efficiency of library screening. In addition, there are AFM-SELEX for atomic force microscope and CE-SELEX for capillary electrophoresis, which greatly improve the success rate of SELEX technology. The screening of nucleic acid aptamers enables the discovery of specific nucleic acid sequences of aptamers that bind to their target molecules with high affinity. The screening of nucleic aptamers provides new research directions for the treatment of diseases and the development of new drugs. Over the years, TEK Biotech has been committed to providing customers with high affinity, high specificity aptamer screening technology services, for customers' subsequent aptamer function verification, drug molecule screening, and other downstream research and development support.

Consult Now Nucleic Acid Aptamer Library Construction Service

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