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Cell Nucleic Acid Aptamer Screening Service

TekBiotech is committed to providing customers with high-affinity and high-specificity nucleic acid aptamer screening technology services, such as specific aptamer screening services for targets such as proteins, peptides, amino acids, small molecules, cells and bacteria, and metal ions.


Cell Nucleic Acid Aptamer Screening Service

 

Nucleic acid aptamer screening refers to the principle of systematic evolution of ligands by exponential enrichment (SELEX), which is based on the incubation, washing and amplification of target molecules and nucleic acid aptamer libraries to obtain target oligonucleotide fragments (DNA fragments or RNA fragments) from nucleic acid aptamer libraries. As a functional nucleic acid, nucleic acid aptamers have many advantages. Based on their high specificity, they can accurately lock target molecules and effectively avoid interference from non-specific binding. Through SELEX technology, aptamers can be synthesized rapidly and in large quantities without the need for cumbersome biological preparation processes. Nucleic acid aptamers can maintain the integrity of their structure and function under a variety of environmental conditions, while having higher thermal stability and lower immunogenicity. In addition, due to their relatively small molecular weight, aptamers selected by cell-specific aptamers are easier to penetrate cell and tissue barriers and quickly reach the site of action. Cells are used as screening targets. Since their surfaces are covered with various proteins and molecules, the nucleic acid aptamers obtained by screening can theoretically bind to any site on the target cell. The aptamers obtained by screening in this way generally lack good specificity. Therefore, during the screening process, we need customers to cooperate with us to provide high-quality negative screening cells, so as to avoid the screening of non-cell-specific targeting aptamers.

The core of SELEX technology is to chemically synthesize a single-stranded oligonucleotide library in vitro, and finally obtain nucleic acid aptamers with high affinity to the target substance through repeated screening and amplification steps. Cell-SELEX focuses on the screening of target substances such as cells and bacteria, and uses centrifugation, precipitation and other means to effectively separate and remove unbound aptamers, thereby carrying out cell-specific aptamer screening, alternating positive screening and negative screening of cells that do not express target proteins, and finally obtaining aptamers. The specific process is shown in Figure 1.


Cell Nucleic Acid Aptamer Screening Service-tekbiotech1.png

Figure 1 Cell-specific aptamer screening service process based on SELEX technology


The nucleic acid aptamer service provided by TekBiotech for various types of samples is based on the exponential enrichment ligand system evolution technology (SELEX screening technology) to screen and obtain the corresponding DNA or RNA sequences, and to meet the screening requirements of different samples through a variety of screening methods (including Cell-SELEX, liquid phase SELEX, etc.). At the same time, the capacity of TekBiotech's aptamer library reaches 10^13-10^14. After 8-10 rounds of screening and enrichment, it can ensure that aptamers for target substances are obtained (binding affinity can reach nM-pM level), which has greater advantages than conventional aptamer screening. The scientific research team of TekBiotech will lay a solid foundation for the subsequent aptamer function verification (including affinity verification, competitive ELISA verification, in vitro targeted cell functional verification (for example: in vitro recognition and inhibition function verification of nucleic acid aptamers, in vitro flow blocking function, etc.), and in vivo functional verification (for example: in vivo targeted inhibition function verification of aptamers, signal pathway blocking function verification, etc.), and provide support for the subsequent scientific research work of customers for targeted molecular drug development.


█ Cell Nucleic Acid Aptamer Screening Service Content and Cycle

 

Screening nucleic acid aptamers for cells is similar to screening targeted peptides for cells. Both require high-quality positive screening cells and negative screening control cells. These two methods of screening targeted sequences are very suitable for the screening of primary cells derived from animal models, which is also the experience accumulated by TekBiotech over the years. The general screening service stages are as follows:


Steps

Service Content

Cycle

Step1:

Nucleic acid aptamer screening

(1) The customer provides positive screening and negative screening cells;

(1) Aptamer library screening and enrichment: PCR amplification enrichment + transcription + gel recovery, 

generally 6-10 rounds;

(2) Screening products for NGS sequencing;

(2) Delivery: 5-15 aptamer sequences, experimental report, raw data (including NGS sequencing raw data, gel image);

10-15 Weeks

Step2:

Aptamer synthesis and flow cytometry verification (optional)

(1) Customers provide cells;

(2) Aptamer synthesis according to sequence;

(3) Aptamer and cell flow cytometry verification;

(3) Delivery: experimental report, raw data;

 4-5 Weeks

 

█ Advantages of Cell Nucleic Acid Aptamer Screening Service

 

Cell Nucleic Acid Aptamer Screening Service-tekbiotech2.pngCell Nucleic Acid Aptamer Screening Service-tekbiotech3.pngCell Nucleic Acid Aptamer Screening Service-tekbiotech4.pngCell Nucleic Acid Aptamer Screening Service-tekbiotech5.pngCell Nucleic Acid Aptamer Screening Service-tekbiotech6.pngCell Nucleic Acid Aptamer Screening Service-tekbiotech7.png


A variety of screening targets

are available: proteins, 

peptides, amino acids, small 

molecules, etc.


Large library capacity, high

project success rate


Mature SELEX technology

platform: the affinity of 

nucleic acid aptamers obtained

by screening can reach nM-pM

level


Rich supporting downstream

verification experiments: 

affinity verification 

(including BLI and SPR 

affinity verification), 

competitive ELISA 

verification, flow blocking 

verification, etc.


Experimental records are 

traceable: Chinese and 

English experimental reports,

original experimental records


One-to-one personalized 

solution customization to 

meet the scientific research 

project needs of various 

customers


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Cell Nucleic Acid Aptamer Screening Service Frequently Asked Questions

  • What is the cell aptamer screening service, and what are the advantages of cell aptamers?

    Our common aptamers include RNA aptamers and DNA aptamers, which targets have high affinity and specificity and are capable of high binding to the target. These aptamers have multiple functions in disease treatment and scientific research. First, it acts as a cell agonist to activate cell receptors and promote the cell to exert its effects. Secondly, it has the effect of antagonist to block the mutual binding and interaction between various structures. Furthermore, the aptamer can bind to the target so that the drug can be accurately transmitted to the therapeutic target. During the cell-SELEX screening, intact live cells were screened as a target, while the associated cell lines were used as negative controls for negative screening to exclude non-specific binding. The Cell-SELEX technology targets multiple cellular targets to generate nucleic acid aptamers, thus providing an advantage in identifying cells as molecules. In disease diagnosis, we can use aptamers for labeling, or use aptamers as a fixative to depurify the cells. These properties of aptamers provide new ideas for novel drug development. One of the highlights of the Cell-SELEX technology is the ability to retain the original conformation of the cellular receptor, which is different from screening using recombinant proteins as targets. TEK Biotech not only provides the screening service of cell nucleic acid aptamers but also covers protein customization and phage display services, providing customers with a full range of one-stop solutions.

  • Comparison of serum stability of DNA aptamer and RNA aptamer? How do we improve the aptamer stability?

    In the case of aptamers, the stability of aptamers in serum has been limiting its application, evaluating the stability of RNA and DNA aptamers. Because RNA aptamers are less stable in serum and RNA aptamers are cheaper than DNA aptamers, researchers tend to screen DNA aptamers in serum. In terms of the experimental data, no modified RNA aptamers have an extremely short half-life in plasma and are rapidly degraded after co-incubation with rat and human serum, whereas DNA aptamers have a half-life of up to 30-60 minutes, showing that DNA aptamers are significantly more stable than RNA aptamers in serum. Therefore, in cases where high serum stability is required, most researchers prefer the DNA aptamers, although the RNA aptamers and DNA aptamers show higher affinity. In response to the aptamer in serum degradation of the disadvantage, scientists use chemical modification to improve stability, 2 '-F modified nucleotides, or ribonucleotide 2' -hydroxyl for methoxy, or the use of methoxyethyl replacement ribonucleotide 2'-hydroxyl hydrogen, these modifications can improve the aptamer and target binding, increase oligonucleotide for nuclease resistance, prolong the half-life of the aptamer. The ability of the aptamer to enhance the aptamer to bind DNA or RNA. In addition, improving the serum stability of the aptamer can also be achieved by lipid modification, PEG modification, and optimization of the aptamer sequence.

  • How do we guarantee the specificity of the selected aptamer when screening the cellular nucleic acid aptamer? How to ensure that the development of aptamers can play the desired role?

    TEK Biotech biological in the process of nucleic acid aptamer screening, through several rounds of screening and enrichment process, step by step to improve the affinity of nucleotides in the library, the previous screening products as the library of the next round of screening, nucleotide enrichment, and screening, at the same time, in the negative control using other cell lines, other cell lines, and target cell structure, can be used as a negative screen target, can further elute the non-specific binding sequence, to improve the specificity of the final selected aptamer. After multiple rounds of selection, we performed the sequencing analysis of the final resulting nucleotide library. Through bioinformatics methods, the optimal aptamer sequence can be determined for the next step of optimization and validation. We often use fluorescence validation, SPR, and cell experiments to verify the specificity of the selected nucleic acid aptamers. Based on the practical experience of Teker tech, we recommend functional validation of aptamer using flow cytometry. Unlike other methods, flow cytometry enables the analysis and sorting of individual cells. Experiments can also be designed based on the desired application of the aptamer, for example, to verify whether the therapeutic aptamer can block tumor cell signaling or apoptosis.

  • What is the fitness system for internalization? How to help cell aptamers?

    Aptamers are generated by the SELEX screening process. Compared with techniques such as antibodies, aptamers synthesized are less expensive and have higher specificity and affinity. Despite the outstanding advantages of aptamers demonstrated in in vitro experiments, most aptamers cannot autonomously enter the cell and require the assistance of external mechanisms. Scientific studies have shown that only a few aptamers have successfully achieved cell internalization. Adapter internalization refers to the entire entry of the aptamer into the interior of the cell. Aptamers are essentially single-stranded oligonucleotide fragments that cannot cross the cell membrane directly into the cell interior without help. The internalization of aptamers is important in in vivo applications. Through internalization, aptamers can carry drugs or other therapeutic molecules into the cell interior and target binding, realizing the precise treatment of the target. To make aptamers with the ability to internalize, we can optimize the design and screening steps of the whole process and adopt the most cutting-edge technology to select aptamers with higher affinity and specificity, thus strengthening their binding force to cell surface receptors. At the same time, the gamete can also be chemically modified, such as adding fluorine, amino, methoxy, and other functional groups to adjust the physical and chemical properties of the aptamer, enhance stability, promote the interaction between the gamete and the cell membrane, and then promote the internalization process of the gamete.

  • What factors should we pay attention to in the cell nucleic aptamer screening? How to improve the affinity of the aptamer screening?

    The same cell culture conditions are crucial for the success of Cell-SELEX. It is best to match the cell cycle, passage times and growth conditions, and the confluence of cells. Both prolonged cell growth and changes in culture conditions affect cell morphology and cells indicate protein expression, resulting in reduced efficiency of the Cell-SELEX screen. Furthermore, to reduce the nonspecific binding of oligonucleotides, we can decal target cells using reagents such as tRNA, salmon sperm DNA, or an endogenous biotin-blocking kit.Cell-SELEX allows screening of adherent and suspended cultured cells, first cleaned using PBS to reduce the effect of medium and serum on specific screening before subsequent aptamer screening. To be careful, treatment with trypsin causes degradation or damage of the markers indicated by the cells, so the trypsin-treated cells need to be recovered by incubating with the medium for at least 2 hours. Moreover, if we use adherent cells as cell fluid for aptamer screening, we shake the flask every time to prevent cell adhesion.Cell-SELEX screening was performed in the range of 4-37℃, and both appropriate temperature and prolonged incubation time would increase the affinity of the aptamer and increase the possibility of raptor incorporation into cells. Aptamer affinity can be improved by optimizing cell screening conditions, chemical modification of aptamers, and combining high-throughput sequencing and bioinformatics.

Consult Now Cell Nucleic Acid Aptamer Screening Service

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